libpappsomspp
Library for mass spectrometry
fastaoutputstream.cpp
Go to the documentation of this file.
1
2/*******************************************************************************
3 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4 *
5 * This file is part of the PAPPSOms++ library.
6 *
7 * PAPPSOms++ is free software: you can redistribute it and/or modify
8 * it under the terms of the GNU General Public License as published by
9 * the Free Software Foundation, either version 3 of the License, or
10 * (at your option) any later version.
11 *
12 * PAPPSOms++ is distributed in the hope that it will be useful,
13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 * GNU General Public License for more details.
16 *
17 * You should have received a copy of the GNU General Public License
18 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19 *
20 * Contributors:
21 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22 *implementation
23 ******************************************************************************/
24#include "fastaoutputstream.h"
25
26namespace pappso
27{
29 : m_ofastastream(otxtstream)
30{
31}
32
34{
35}
36
37void
39{
40
41 m_ofastastream << ">" << protein.getAccession() << " "
42 << protein.getDescription() << Qt::endl;
43 m_ofastastream << protein.getSequence() << Qt::endl;
44}
45
46} // namespace pappso
FastaOutputStream(QTextStream &otxtstream)
void writeProtein(const Protein &protein) override
const QString & getAccession() const
Definition: protein.cpp:127
const QString & getDescription() const
Definition: protein.cpp:137
const QString & getSequence() const
Definition: protein.cpp:122
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39